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How Taxes Work in a Brokerage Account (and How to Manage Them)

Brian Rood, CFP®, ADPA® | January 3, 2026

The quick takeaway

  • What’s taxed: Capital gains, dividends, and interest inside a taxable brokerage account.
  • When it’s taxed: Generally when you sell (gains), when you receive income (dividends/interest), and when mutual funds distribute gains.
  • How to manage it: Favor long‑term holding periods, choose tax‑efficient investments, and use loss or gain harvesting thoughtfully—coordinated with your broader tax picture.

What exactly is a brokerage account?

A brokerage account is your flexible, non‑retirement investing account for stocks, bonds, mutual funds, and ETFs. You might see it titled as:

  • Taxable account or taxable brokerage account
  • Individual, Joint/JTWROS, or TOD (Transfer on Death)

These are titling/registration options for the same core idea: unlike IRAs or 401(k)s, a brokerage account is taxable each year based on what happens inside it. Knowing what triggers tax helps you plan and keep more of what you earn.


What’s taxed (and at what rate)

Capital gains: short‑term vs. long‑term

  • Short‑term gains: Sold in one year or less. Taxed at your ordinary income rate.
  • Long‑term gains: Held more than one year. Taxed at the lower long‑term capital gains rates (0%, 15%, or 20%, depending on your income).

Note: Higher‑income investors may also owe the 3.8% Net Investment Income Tax (NIIT) on investment income.

Special cases to know:

  • Collectibles can be taxed up to 28%.
  • Unrecaptured Section 1250 gain (from certain real‑estate depreciation) can be taxed up to 25%.

Why it matters: Crossing the one‑year mark can materially reduce taxes—especially if you’re in a higher bracket.


Dividends: qualified vs. ordinary

  • Qualified dividends: Meet IRS requirements and are taxed at the long‑term capital gains rates.
  • Ordinary (non‑qualified) dividends: Taxed at your ordinary income rate.

Management tip: Review whether your dividends are qualified on your 1099‑DIV—it can noticeably change your tax bill.


Other taxable events

  • Interest from bonds/cash: Taxed as ordinary income.
  • Mutual fund capital‑gain distributions: Taxable in the year they’re paid, even if you didn’t sell anything.
  • ETFs: Often more tax‑efficient than mutual funds, especially index ETFs that can use in‑kind redemptions. However, active ETFs can still distribute gains, and selling any ETF can realize capital gains.

Smart tax tactics inside a brokerage account

Tax‑loss harvesting

Sell investments at a loss to offset realized gains.

  • Offset rule: Losses offset gains dollar‑for‑dollar.
  • Excess losses: Up to $3,000 can offset ordinary income each year; the rest carries forward.

Watch out for the wash‑sale rule:

  • If you buy a “substantially identical” security within 30 days before or after selling at a loss, the loss is disallowed.
  • The rule applies across all your accounts (including IRAs) and can be triggered by spouse accounts.
  • Use similar—but not substantially identical—alternatives for 31+ days to keep the deduction.

Tax‑gain harvesting

Intentionally realize long‑term gains in a low‑income year—potentially at a 0% federal rate if you’re under the current‑year thresholds.

  • Why it’s smart: You reset (step up) your cost basis, lowering future taxable gains when your income—and rates—may be higher.
  • Example: Buy at $10,000, value grows to $15,000. In a low‑income year, you sell, realize the $5,000 gain at 0%, and immediately repurchase. There’s no wash‑sale rule for gains, and your new basis is $15,000.
  • Great candidates: Career breaks, early retirement before Social Security/RMDs, gap years between jobs.

Heads‑up: Capital gains can ripple into other areas:

  • ACA premium tax credits
  • Medicare IRMAA surcharges
  • Social Security taxation thresholds Coordinate before realizing large gains.

Estimating and paying taxes

Expect these forms at tax time:

  • 1099‑B: Proceeds, cost basis, and realized gains/losses from sales
  • 1099‑DIV: Dividends and capital‑gain distributions
  • 1099‑INT: Interest income
  • Form 8949 + Schedule D: Where gains/losses are detailed and summarized

If brokerage income is significant, consider:

  • Updating withholding or making quarterly estimated payments (Form 1040‑ES) to avoid underpayment penalties.
  • Remember that state taxes may also apply to investment income and gains.

Tax‑efficient planning tips

  • Hold long enough

Aim to cross the one‑year mark for long‑term capital gains treatment when it aligns with your investment plan. 

  • Choose tax-efficient vehicles

Favor ETFs and broad index funds for tax efficiency. Consider municipal bonds when appropriate for your bracket and state.

  • Use loss and gain harvesting with intent

Don’t wait until December; evaluate throughout the year and coordinate with your other income sources and benefits.

  • Time transactions

If you expect a higher bracket next year, consider realizing gains in the current year. Delay recognizing losses until they can offset more expensive gains.

  • Practice smart asset location

Place tax‑inefficient assets (e.g., taxable bonds, high‑turnover funds) in tax‑advantaged accounts when possible. Keep equities/ETFs in taxable where long‑term rates apply.

  • Reinvest with intention

Dividend reinvestment is convenient, but be sure it aligns with cash‑flow needs and tax planning. Turning off reinvestment selectively can simplify rebalancing and tax‑loss harvesting.


Recordkeeping that actually helps

Keep clean records of:

  • Purchase dates and cost basis
  • Sale dates and proceeds
  • Dividends, interest, and distributions received
  • Realized gains/losses and any carryforwards
  • Reinvestment activity

Good records make tax season smoother and support your numbers if the IRS asks questions.


How we handle this at Artisan Financial Planning

  • Planning first: We start with your cash‑flow, tax bracket, and goals—then layer in investment selection and timing.
  • Tax‑aware implementation: We prefer tax‑efficient ETFs and index funds when appropriate, monitor holding periods, and use targeted loss/gain harvesting to manage brackets—never at the expense of your core strategy.
  • Custody and execution: We implement through our partner custodian Altruist, using lot‑level controls and clear reporting to keep taxes transparent and manageable.
  • Coordination: We collaborate with your CPA to align investment moves with your broader tax picture.

Common questions I’m hearing

  • “Do I need to change anything right now?”

If you’re realizing mostly long‑term gains and your portfolio fits your plan, probably not. We’ll adjust as your bracket and goals change.

  • “Are ETFs always better for taxes than mutual funds?”

Often—but not always. Some mutual funds are very tax‑efficient; some ETFs can kick off income. Vehicle choice should fit your plan, not just your taxes.

  • “Could harvesting gains hurt my ACA credits?”

It can. It may also affect Medicare IRMAA and Social Security taxation thresholds. We’ll model the trade‑offs before realizing gains in sensitive years.

Final word

Taxes in a brokerage account don’t have to be stressful. With thoughtful holding periods, tax‑efficient investments, and well‑timed loss or gain harvesting, small decisions compound into real, after‑tax results over time. If your situation is getting more complex—or you want a second set of eyes—let’s review your plan together and coordinate with your tax pro.

Disclosures: This post is for educational purposes only and is not individualized tax or investment advice. Tax laws and income thresholds change annually; consult your tax advisor for your specific situation. Investing involves risk, including possible loss of principal. State taxes may apply.